Hmm, not sure what the black spots are (dead or decaying matter?) but the browns look like diatoms. I'd try a partial
water change using a gravel vac on the top layers to remove the black stuff. Depending on the shape the live rock is in and the make up water for water changes (
RO or tap water), you should see a cycle of the browns to greens to purple calcerous
coralline algae. You may also see the diatoms after heavy feedings and sometimes water changes if you're not using purified water such as
reverse osmosis or
RO/DI filtered water.