Hmm. Well, the nitirite reading is not perfect, but it also is not currently high enough that it would be my first suspect. Has it been higher lately or is .1 pretty representative?
What fish have you had in the tank, both the ones that died and the ones still going? Are they pretty new, or have they been in there for most of the 3 months the tank has been set up?
Honestly at this point I do not even have a guess, so I am fishing for more information. (I'd like to say that pun was intentional, but it wasn't.

)