Different strains behave drastically different, but for the most part we don't have this problem.
We don't tend to move the females anymore, but we get about the same amount of babies by having thick live plants in the tank for the fry to use for hiding. We look at that as taking some of the stress away from the female while saving babies, so it is a win/win situation, however, the previous posters could be correct.
Sometimes the males will harass females to death, sometimes moving them can cause stress issues that weaken them to the point that something that wouldn't have killed them before would kill them. (Kinda like Immune-defecent humans can sometimes be killed by the common cold.) Livebearers, for the most part, can abort their fry at will. Guppies, mollies, platies, etc can, if they feel the conditions are unsafe for their fry, abort the fry and absorb the fetii back into their systems (scavenging them for nutrition, sorta), or can go ahead and have them and just have still born fry.
Breeding fish is all about keeping the stress level as low as you can WITHOUT using chemicals. For guppies that could include some of the following:
-lots of dense live plants (guppy grass and aquatic mosses are good choices)
-high female to male ratio (2f per 1m is the absolute least there should be, the more Fs per Ms the better. 5f per 1m would be awesome. One male could take care of keeping 50 or more females going constantly. The reason being that female livebearers store sperm for upwards of 6 months, so as long as the male can continue to keep them with sperm they are going strong for months.

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-Not overfeeding
-Keeping a good waterchange schedule. (You do not want ammonia, nitrites, or nitrates to cause stress with the fish.)
-Turn on lights in the room several minutes BEFORE you turn on the lights to the tank. You do not want to startle your fish. (There have been fish slam into the side of a tank and kill themselves or, in some of the larger fish, break the glass in similar situations.)
Hope any or all of that helped you.
