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Re: brown water
Both of the columns of my UGF are nearly opaque, but I think that's from mineral buildup. Nothing looks brown.
I know that UGFs are somewhat controversial. I'm giving mine a second chance (with a bit of an upgrade), but many people suggest not even bothering to put them in. Apparently, the gunk from the tank that gets pulled down into the gravel can get caught under the plate and create stagnant areas of water.
I don't know if this has any bearing on what's happening with your tank, though. If I were you, I would buy a bottle brush just big enough to get into the tubes and scrub them out. Make sure your filter is running and get ready to vacuum out some of the extra stuff from the water.
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